NASC Stock Detail Page
NASC ID: N581909
Name: SALK_081909
ABRC stock number: SALK_081909
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_081909.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G47330.1 (at chr 5 pos 19207980 (C/19207980-19208031) on the TAIR10). The sequences' 1-52 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 68, R 67, C 62 N 64. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO430815. SALKseq_081909.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G29750.1 (at chr 1 pos 10416042 (C/10416042-10416072) on the TAIR10). The sequences' 1-31 bps mapped on the genome, 56-79 bps onto the T-DNA. Pools P 68, R 67, C 62 N 64. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO424183. SALKseq_081909.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G14605.1 (at chr 4 pos 8380553 (W/8380488-8380553) on the TAIR10). The sequences' 1-66 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 68, R 67, C 62 N 64. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO427499. SALKseq_081909.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G47430.1 (at chr 5 pos 19236433 (C/19236433-19236486) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 52-79 bps onto the T-DNA. Pools P 68, R 67, C 62 N 64. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO434120.
Donation Date: 2003-03-11
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_081909
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock is only available on request as a homozygous/confirmed stock has replaced it. The replacement line is SALK_081909C.
Status | Price (£) |
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Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.